PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7BL_6183FA9D4.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 229aa    MW: 25674.2 Da    PI: 6.2491
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7BL_6183FA9D4.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.61.3e-14125211387
                            EE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                     B3   3 kvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                            k+lt+sdv + gr+vlpkk ae+    + ++ ++ l++ d     +W++k+++  ++ks++y+l   ++eFvk +gL++gD ++++  
  Traes_7BL_6183FA9D4.1 125 KELTKSDVANVGRIVLPKKDAEASlpPLCERDPVILQMDDmVLPITWKFKYRFwpNNKSRMYILD-STSEFVKTHGLQAGDALIIY-- 209
                            899******************98888666666766777775555*******99777777777777.9****************998.. PP

                            SS CS
                     B3  86 gr 87 
                            ++
  Traes_7BL_6183FA9D4.1 210 KN 211
                            44 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.16E-16122210IPR015300DNA-binding pseudobarrel domain
CDDcd100172.67E-21122220No hitNo description
Gene3DG3DSA:2.40.330.101.6E-21122217IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.9E-8123222IPR003340B3 DNA binding domain
PfamPF023623.0E-11125215IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MLNKNAYSYY PAPNQEHTHH FSLDNNQAKD PGSIPSFGIE SFNTTSLAPN MSAHMPPMEG  60
PLPTKEPEAP EDMPARVATI KDEMDARNGV ELKCETVDAL PELKQGHESC ASKFNSGEYQ  120
VILRKELTKS DVANVGRIVL PKKDAEASLP PLCERDPVIL QMDDMVLPIT WKFKYRFWPN  180
NKSRMYILDS TSEFVKTHGL QAGDALIIYK NPVPGKYIVR GEKAIQQTN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3739020.0AK373902.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3046N18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003573243.11e-122PREDICTED: B3 domain-containing protein IDEF1-like
SwissprotQ6Z1Z31e-104IDEF1_ORYSJ; B3 domain-containing protein IDEF1
TrEMBLW5HMN81e-173W5HMN8_WHEAT; Uncharacterized protein
STRINGMLOC_37086.21e-165(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113462831
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.12e-35B3 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]